samtools index with cram: EOF marker is absent. The input is probably truncated. · Issue #146 · samtools/samtools · GitHub
![RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing. - Abstract - Europe PMC RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing. - Abstract - Europe PMC](https://europepmc.org/articles/PMC4918025/bin/f1000research-5-9644-g0002.jpg)
RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing. - Abstract - Europe PMC
split by reference chr = "EOF marker is absent. The input is probably truncated." · Issue #137 · pezmaster31/bamtools · GitHub
![Error in alignment/'[W::bam_hdr_read] EOF marker is absent. The input is probably truncated' · Issue #439 · FelixKrueger/Bismark · GitHub Error in alignment/'[W::bam_hdr_read] EOF marker is absent. The input is probably truncated' · Issue #439 · FelixKrueger/Bismark · GitHub](https://user-images.githubusercontent.com/64626735/120408365-e2698980-c31c-11eb-834b-66cde1d95b69.png)